Workshop 6: Solution Studies of Macromolecules: Global and Local Structure

Date: Wednesday, May 20, 2009

Organizer(s): Sayan Gupta (Case Western Reserve University), sayan@bnl.gov

Location: Biology, Bldg. 463

Description: Small angle x-ray solution scattering (SAXS) has, for many years, been a valuable technique for examining macromolecular structure and dynamics. Recently, local structural information in solution for large macromolecules and complexes has been made available by advances in synchrotron X-ray mediated hydroxyl radical footprinting (XF). This technique has been used to probe the structure and dynamics of proteins and nucleic acids in solution at amino-acid and single nucleoside resolution, respectively. Lately, several groups have combined XF results with SAXS to improve 3D models through refinements. This workshop will focus on experimental and data analysis methodologies of XF and SAXS with examples of their application to investigate RNA folding, protein-protein and protein-nucleic acid interactions, as well as approaches to examine the structure of large complexes, membrane proteins and biomolecular interactions inside living cells. The workshop will also provide a venue for XF and SAXS users as well as the structural biology community to share ideas, as well as discuss future directions for their research. This workshop will focus on the synergy between XF and SAXS technologies and contribute to the development of world leading Life Science sector beamlines for Macromolecular Structure and Function at the NSLS II.

StartsEndsList of Speakers
8:30 AM 
Check-in/ Continental Breakfast
9:00 AM9:15 AM
Welcome/ Introduction
  
Session Chair: Rick Russell, University of Texas
9:15 AM9:45 AM Sarah Woodson, Johns Hopkins University
Probing 30S Ribosome Assembly With X-ray Hydroxyl Radical Footprinting
9:45 AM10:15 AM Joanna K. Krueger, University of North Carolina, Charlotte
Constraints for Building Structural Models of Gelsolin, an Actin Dimer and Their Complex in Solution Using Small-Angle Scattering Data
10:15 AM10:30 AM
Coffee Break
10:30 AM10:45 AM Sayan Gupta, Case Western Reserve University
Introduction to X-ray Protein Footprinting
10:45 AM11:00 AM Janna Kiselar, Case Western Reserve University
The Role of Mass Spectrometry in Probing the Structure of Macromolecular Complexes
11:00 AM11:30 AM Thomas Irving, Illinois Institute of Technology
Facilities for Static and Time-Resolved X-ray Solution Scattering at the BioCAT Beamline 18ID at the Advanced Photon Source
11:30 AM12:00 PM B. Tracy Nixon, Pennsylvania State University
SAS Studies of Two Component Signal Transduction and AAA+ ATPase Function
12:00 PM1:30 PM
Lunch Break and Poster Session
  
Session Chair: Thomas C Irving, Illinois Institute of Technology
1:30 PM2:00 PM Mark R. Chance, Case Western Reserve University
Footprinting and Conformational Dynamics: Synergy with SAXS
2:00 PM2:30 PM Rick Russell, University of Texas, Austin
Time-Resolved SAXS and Footprinting as Global and Local Probes of RNA Folding
2:30 PM2:45 PM
Coffee Break and Group Photo
2:45 PM3:15 PM Lin Yang, NSLS, Brookhaven National Laboratory
Biomolecular Solution Scattering at NSLS: Current Status and Outlook
3:30 PM5:30 PM Lin Yang, BNL and Sayan Gupta, Case Western, Brookhaven National Laboratory
Beamline Tour